Cheesecake Brownie Bites are rich, fudgy, bite-sized brownies swirled with a smooth and tangy cheesecake filling. They are easy to make in a mini muffin pan and are perfect for parties, lunchboxes, dessert trays, holidays, or whenever you want a small chocolate treat with a creamy cheesecake center. This recipe makes 30 brownie bites, so there are plenty to share.

Table of Contents
- Ingredients
- How to Make Cheesecake Brownie Bites
- Kelly’s Recipe Tips
- Can Cheesecake Brownies Be Left Out?
- Frequently Asked Questions
- More Bite-Sized Desserts You’ll Love
- Cheesecake Brownie Bites Recipe
There is something especially fun about desserts that come in miniature form. Brownie bites are already hard to resist, but adding a cheesecake swirl makes them even better. Each bite has the deep chocolate flavor of a classic brownie with a creamy, slightly tangy cheesecake layer tucked inside.
These cheesecake brownie bites are a great choice when you want a homemade dessert that feels special but does not require complicated decorating or advanced baking skills. The brownie batter comes together with pantry staples, while the cheesecake filling needs only cream cheese, sugar and an egg yolk. Once layered in a mini muffin pan, the two mixtures bake into tender, chocolatey two-bite treats.
The best part is the yield. Instead of making just a few small brownies, this recipe makes 30 mini cheesecake brownies. Serve them on a dessert platter, pack them in lunchboxes, bring them to a potluck, or keep them chilled in the refrigerator for an easy sweet snack throughout the week.
Ingredients
This recipe uses simple baking ingredients to create a fudgy brownie base and a creamy cheesecake filling. For the best texture, measure the dry ingredients carefully and allow the cream cheese to soften before mixing.

For the brownie batter you’ll need:
- Eggs: Room-temperature eggs blend more smoothly into the batter and help create an even texture.
- Baking cocoa: Natural baking cocoa works well, and Dutch-processed cocoa can also be used in this recipe.
- Salt: A small amount of salt balances the sweetness and enhances the chocolate flavor.
- Baking powder: This gives the brownie bites a slight lift while keeping them tender.
- Instant espresso powder: Espresso powder deepens the chocolate flavor. You can omit it, use instant coffee for a milder flavor, or replace the espresso powder and water with brewed and cooled coffee.
- Vanilla extract: Vanilla rounds out the flavor of the chocolate batter.
- Sugar: Granulated sugar sweetens both the brownie batter and the cheesecake filling.
- Butter: Melted unsalted butter adds richness and helps create a fudgy texture.
- Flour: All-purpose flour gives the brownie bites structure. Spoon it into the measuring cup and level it off rather than packing it down.
For the cheesecake filling you’ll need:
- Cream cheese: Use softened full-fat cream cheese for the creamiest filling.
- Sugar: A small amount sweetens the cheesecake layer without making it overly sweet.
- Egg yolk: The yolk helps the cheesecake filling set while keeping it rich and smooth.
See the recipe card below for the full ingredient amounts and detailed instructions.
How to Make Cheesecake Brownie Bites
These mini cheesecake brownies may look impressive, but they are simple to assemble. You will need a mini muffin pan, preferably nonstick, and a mixing bowl for each component. The batter can be mixed by hand with a sturdy spatula, although an electric mixer can be used for the cheesecake filling if desired.
- Whisk the brownie base ingredients. In a large bowl, combine the eggs, baking cocoa, salt, baking powder, espresso mixed with water, and vanilla until smooth and evenly blended.
- Add the sugar, butter and flour. Stir in the sugar and melted butter, then fold in the flour. A firm rubber spatula makes it easier to bring the thick brownie batter together.
- Make the cheesecake filling. In a separate bowl, stir together the softened cream cheese, sugar and egg yolk until the mixture is smooth. Transfer it to a pastry bag or a plastic bag so it is easy to pipe into the muffin cups.


- Fill the mini muffin pan. Grease the pan well, then add brownie batter to each cup. Pipe cheesecake filling over the batter and top with a little more brownie batter. For a marbled look, gently swirl the layers with a toothpick or skewer.



- Bake the brownie bites. Bake in a 350ºF oven for about 12 minutes, or until a toothpick inserted into the center comes out clean. Let the brownie bites cool in the pan for 10 minutes before moving them to a rack.

Pro Tip: A silicone mini muffin pan can make it easier to remove the brownie bites, but the baking time may be a few minutes longer.
Kelly’s Recipe Tips
- When measuring flour and cocoa powder, spoon the ingredients into the measuring cup and level them with the back of a knife. Scooping directly from the container can pack in too much.
- Use a mini ice cream scoop or small cookie scoop to portion the brownie batter quickly and evenly.
- For a pretty marbled top, use a toothpick or skewer to swirl the cheesecake filling into the brownie batter before baking.
- Use a sharp knife to loosen the edges if the brownie bites stick to the pan after cooling.
Can Cheesecake Brownies Be Left Out?
Because these brownie bites contain cream cheese, it is best to store them in the refrigerator. Place them in an airtight container or wrap them tightly with plastic wrap. They will typically keep for about 3 to 5 days when refrigerated.
If you are stacking the brownie bites, place parchment paper or wax paper between the layers to help prevent sticking. Freezing is not recommended because it can change the texture of the cheesecake filling.
Frequently Asked Questions
Yes. A boxed brownie mix is a convenient shortcut. Prepare the brownie batter according to the package directions, then make the cheesecake filling as written and layer the two mixtures in the mini muffin pan.
Use a nonstick mini muffin pan and grease it well with cooking spray or softened butter. A silicone baking pan can also help with easy release, although the baking time may be slightly longer.
Yes. Espresso powder enhances the chocolate flavor, but it can be left out. You can also use instant coffee granules or substitute brewed and cooled coffee for the espresso powder and water.
Yes. If you do not have a mini muffin pan, you can make larger cheesecake brownies in a standard muffin pan. Add 5 to 10 minutes to the baking time and check for doneness with a toothpick.

More Bite-Sized Desserts You’ll Love
Small desserts are easy to serve and fun to eat. If you enjoy these cheesecake brownie bites, you may also like other mini treats such as churro bites, mini doughnut muffins, pretzel bites, cheesecake cookie pops, mini chocolate chip cookies and muffin tin apple pies.
Cheesecake Brownie Bites

Ingredients
For the brownie batter:
- 4 large eggs
- 1 1/4 cups baking cocoa
- 1 teaspoon salt
- 1 teaspoon baking powder
- 1 tablespoon instant espresso powder
- 2 teaspoons water
- 2 teaspoons vanilla extract
- 2 1/4 cups sugar
- 1 cup unsalted butter, melted
- 1 1/2 cups all-purpose flour
For the cheesecake filling:
- 1 (8-oz.) package cream cheese, softened
- 3 Tablespoons sugar
- 1 large egg yolk
Instructions
-
Preheat the oven to 350ºF.
-
In a large bowl, whisk together the eggs, baking cocoa, salt, baking powder, espresso powder mixed with water, and vanilla until fully combined.
-
Stir in the sugar and melted butter, then add the flour and mix until the brownie batter is smooth and thick. Set aside.
-
In a separate bowl, stir together the softened cream cheese, sugar and egg yolk until smooth. Transfer the filling to a pastry bag or plastic bag.
-
Grease a nonstick mini muffin pan with cooking spray or butter. Add 1 tablespoon of brownie batter to each cup, pipe cheesecake filling on top, then finish with about 1 teaspoon of brownie batter.
-
Bake for about 12 minutes, or until a toothpick inserted into the center comes out clean.
-
Let the brownie bites cool in the pan for 10 minutes, then transfer them to a cooling rack. Serve warm or chilled.
Kelly’s Notes
- The espresso powder enhances the chocolate flavor, but it can be omitted if you prefer.
- A mini ice cream scoop is a quick and tidy way to portion the brownie batter into the pan.
- Swirl the cheesecake filling and brownie batter with a toothpick for a marbled effect.
- If the brownie bites do not release easily, carefully run a sharp knife around the edges.
Nutrition
Carbohydrates: 23g,
Protein: 2g,
Fat: 7g,
Saturated Fat: 4g,
Cholesterol: 43mg,
Sodium: 90mg,
Potassium: 92mg,
Fiber: 1g,
Sugar: 16g
Did you try this recipe?
Leave a comment below with your star rating.